PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1616s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 179aa    MW: 19845.8 Da    PI: 9.7655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1616s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.2e-172271255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +ykG+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  SapurV1A.1616s0040.1.p 22 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 71
                            69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-292180IPR001471AP2/ERF domain
CDDcd000189.93E-252280No hitNo description
PROSITE profilePS5103221.9442279IPR001471AP2/ERF domain
PfamPF008472.0E-102271IPR001471AP2/ERF domain
SMARTSM003801.9E-362285IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-202279IPR016177DNA-binding domain
PRINTSPR003673.5E-112334IPR001471AP2/ERF domain
PRINTSPR003673.5E-116181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MESGVDKEMA TRKRGGMGGE RQYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSSPVAAAR  60
AYDTAVFYLR GPSARLNFPE FLAGENFGGG GSFGDMSAAS IRKRATEVGA RVDAIETALS  120
SHRRSRHHDD RQRNSSNSSS SNDNNETVVD SRELKSGTVD LNKMPDPEDQ DGDEWDRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-142179463ATERF1
3gcc_A4e-142179463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559460.0EF155946.1 Populus trichocarpa RAP2-like protein (RAP2L5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307277.16e-97AP2 domain-containing transcription factor family protein
RefseqXP_011006858.16e-97PREDICTED: ethylene-responsive transcription factor ERF010
SwissprotQ9FH942e-57ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA9PL957e-97A9PL95_POPTR; AP2 domain-containing transcription factor family protein
STRINGPOPTR_0005s18430.12e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.16e-45DREB and EAR motif protein 3